Seperating the Scenes

 After speaking to Mike, it was decided it would be easier for me to work on every scene as a seperate file, and I could compile them all at the end into After Effects. My issue, however, was I'd done the whole film so far on one timeline. I spent a decent amount of time seperating each scene (a scene being anything between each cut) onto seperate canvases like so

It got a little tricky when I had an animated portion in every scene (the leaf) but it was only animated at the end, so I waited until I started the colouring process to put those scenes on their own, so I had many clips that just consisted of a few seconds of animation.